Bio105 Exam3 Notes.txt
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Bio105 Exam3 Notes.txt
bio105 development exam3
bio105 development exam3
the most internal germ layer, forms the lining of the gut and other internal organs.
the most exterior germ layer, forms skin, brain, the nervous system, and other external tissues
the the middle germ layer, forms muscle, the skeletal system, and the circulatory system
What are the three processes of gastrulation?
Cell fate specification
Dynamic, spatial and temporal specification of cell behaviors and tissue properties
e.g. formation of limbs, spinal cord, somites, etc
Describe cell fate specification
Determination (decision-making) of final fates
Describe morphogenetic events
Cell movements that result in unique morphological and functional structures
e.g. neuron outside of spinal chord
e.g. limb outside of somite
What are the different types of cell movements during gastulation?
Sheet of cells move inward
Single cells migrate as mesenchymal cells from epithelium
An epithelial group of cells rolls underneath to form a deeper level
e.g. formation of embryonic cavity
Cells from two rows move between one other to form a single cell layer
Results in increase in length (cell division and flattening)
Moving layer of cells on surface
e.g. Epithelial cells spread across the embryo
Most studied in zebrafish
Highly directional intercalation.
Cells converge by intercalating perpendicular to the axis of extension, resulting in the overall extension of the tissue in a preferred direction.
Describe sea urchin gastrulation
Cell adhesion properties of migrating cells change (driven by cadherin expression)
Mesenchyme cells (multipotent embryonic connective tissue/cells) move by ingression and will form mesoderm
Cells in vegetal plate undergo primary invagination to form archenteron
Mouth forms at animal pole where archenteron meets ectoderm
Vegetal pole forms anus
What drives cell movements?
Cell adhesion properties of cadherins and integrins change binding to other cells and extracellular matrix
Region of embryo where cells move to begin forming mesoderm
"Primitive streak" in mammals
Migrate by ingression
Give rise to mesoderm
What cell movements occur in Xenopus gastrulation?
Invagination below center of gray crescent to form dorsal lip of future blastopore
Animal pole cells move across surface and involute into interior of embryo to form endoderm and mesoderm
Convergent extension when cells cover embryo and elongate
What is a Bottle Cell?
Cells forming the blastapore lip that change shape (apical constriction) in frog gastrulation allowing cells to invaginate
How does the blastopore lip of the frog form?
Bottle cells change shape
Hormones released which drive invagination
Shape of cells allow migration between the cells (in theory)
How would you show blastopore cells involved in invagination during gastrulation in frog?
Cell ablation should result in lack of invagination
Must also show hormones not produced by western or immunostaining
Also can use transplantation to show that it occurs
How would you show hormones are involved in invagination during gastrulation in frog?
Knockdown (not knockout since frog is not genetic organism) of hormone
In frogs, the ___ cells move using ___ resulting in the ___ or ___ of the embryo.
involuting marginal zone (IMZ), convergent extension, lengthening, stretching
In frogs, ___ cells ___ and instead of ___, their movement results in a ___. These cells produce ___ and ___.
ventral IMZ, intercalate, extending, thickening. ventral mesoderm, somites
What mechanism of cell movement is involved in zebrafish gastrulation?
What proteins are involved in zebrafish gastrulation?
Describe Wnt in terms of zebrafish gastrulation.
Both canonical (beta-catenin) and non-canonical pathways
Regulates organizrs in both the frog and fish
Regulates both cell movements and cell specification (differentiation)
Describe Nodal in terms of zebrafish (all vertebrates) gastrulation.
Differentiation of mesodermal lineages
Describe BMP in terms of zebrafish gastrulation.
Dorso-ventral BMP gradient formed at beginning of gastrulation
Mesoderm induction and dorso/ventral patterning of germ layers
Modulates E-cadherin expression
Promotes epibolic cell movements
Describe FGF in terms of zebrafish gastrulation.
Activates expression of Snail (transcription factor which inhibits E-cadherin transcription)
What does FGF do in the chick?
Regulates cell movement inside embryo
Describe FGF8 in the chick.
Expressed in primitive streak
Chemorepellant directing cells to move away from blastopore
Cells move to blastopore and then release hormones to keep other cells away
What does FGF8 do in the mouse?
high levels are required for normal mesodermal migration
Describe FGF4 in the chick.
Expressed in the extending axial mesoderm
Chemoattractant for the dorsal convergence of the lateral mesoderm
___ is expressed in the sphere stage of zebrafish, and is responsible for ___.
BMP, dorsoventral patterning and convergence and extension
___ is expressed in the 50% ___ stage of zebrafish and is responsible for ___.
Wnt/beta-catenin, epiboly, dorsoventral patterning and germ layer separation
___ is expressed in the shield stage of zebrafish and is responsible for ___.
FGF; dorsoventral patterning, germ layer separation, convergence and extension
___ is expressed in the shield stage of zebrafish and is responsible for ___.
Nodal/TGF-beta; germ layer separation, convergence and extension
___ is expressed in the 75% ___ stage of zebrafish and is responsible for ___.
Wnt/PCP and Wnt/PKC; germ layer separation, convergence and extension
___ is expressed in the talibud stage of zebrafish and is responsible for ___.
GPCR; germ layer separation, convergence and extension
The zebrafish embryo develops from ___.
In chick development, the ___ narrows and lengthens forming the ___ -- the chick's ___.
primitive streak, primitive groove, blastopore
In chick development, ___ cells ___ at the midline and ___ at the primitive streak.
epiblast, converge, ingress
What are epiblast cells?
In mammals, tissue derived from the inner cell mass at the end of cleavage
What are trophoblast cells?
Form outer layer of blastocyst and develop into large part of the placenta
The embedding of the embryo intot he wall of the uterus
In the human embryo, ___ cells develop first since the ___ and ___ are needed first.
anterior, brain, heart
___ have a distinct pattern of ___ and ___.
Germ layer precursors, gene expression, morphogenetic movements
Prospective ___ cells migrate as an ___ and go through ___.
ectodermal, epithelial layer, intercalation
Prospective ___ cells migrate as ___ cells (loosely associated).
Prospective ___ cells move as a ___ cell migration.
Prospective ___ cells exhibit ___ behavior.
endoderm, "random walk"
What determines whether a cell becomes mesoderm or endoderm?
___ signalling is essential for ___ formation and ___ leading to that layer.
Nodal, mesoderm, cell movement
___ modulation is critical for cell migration.
The canonical ___ pathway is involved in regulating ___ and ___.
Wnt, cell movements, cell specification
The non-canonical ___ pathway regulates ___, but not directly to ___.
Wnt, morphogenetic movements, specification
#3Nov2011 - Part 1
What are 5 common pathways used in early development and ruing patterning?
The 5 common pathways in early development are ___ in ___ and ___.
highly conserved, evolution, cancer
Wnt is a ___.
For the Canonical Wnt pathway, in the absence of Wnt, ___.
beta-catenin is hyperphosphorylated
How is beta-catenin hyperphosphorylated?
Destroyed by "destruction" complex
Removed by proteosome
For the Canonical Wnt pathway, when Wnt ligand binds to the receptor, ___, ___.
Frizzled/LRP-5/6, beta-catenin is stable (i.e. non-phosphorylated)
What happens after the stabilization of beta-catenin?
Translocated into the nucleus
Interacts with TCF/LEF proteins
Beta-catenin is a ___ and requires ___ to work. Its activation results in ___.
transcription factor, a complex of proteins. activation of cell division
What is ubiquitin?
Small molecule bound to proteins targetted for removal
Results in gene repression
For the non-canonical Wnt pathway, Wnt binds to ___.
Frizzled (Fz) receptor, activating several transcription factors in the cytoplasm
Neither LDL receptor nor beta-catenin are used
Binding of Wnt in the non-canonical pathway leads to ___.
___ and ___ are not used in the non-canonical Wnt pathway but are used in the canonical Wnt pathway.
LRP receptor, beta-catenin
The TGF-beta/BMP pathways lead to ___.
TGF stands for ___ and is a ___.
Transforming Growth Factor, hormone
TGF is a family of proteins that include ___ and is involved in ___.
Vg1, Nodal, BMPs (bone structures); patterning
TGFs are ___ that ___ receptors on the membrame and activate ___ leading to ___.
dimers, cross-link, signal transduction pathways, differentiation
SMADs activate ___.
Notch receptors are ___ composed of ___, ___, and ___ domains.
single-pass transmembrane proteins, functional extracellular (NECD), transmembrane, intracellular
In mammals, members of the ___ and the ___ families, which are located in the ___ cell, function as ___ that activate ___.
Delta-like, Jagged, signal-sending, ligands, Notch signaling receptors
Upon ligand binding, the ___ is cleaved away (___ cleavage) from the ___ domain by ___.
NECD, S2, TM-NICD, TACE (ADAM metalloprotease TNF-alpha converting enzyme)
After cleavage, the ___ remains bound to the ligand and this complex undergoes ___ and ___ within the ___.
NECD, endocytosis, recycling/degradation, signal-sending cell
In the signal-receiving cell, a ___ event mediated by ___ releases the ___ from the ___ (___).
second cleavage, gamma-secretase, NICD, TM, S3 cleavage
After the third cleavage, ___ translocates to the ___ and associates with the ___ family transcription factor complex which results in ___.
NICD, nucleus, CSL (CBF1/Su(H)/Lag-1), activation of the notch target genes
Question for Dr. Soto: In notch pathway, what are the three cleavage events?
Intra and extra cellular domains cleave
TM from NICD
What occurs after NICD enters the nucleus?
Activation of transcription
___ or ___ can bind to the notch receptor.
Describe the Hedgehog pathway.
Contains a family of secreted proteins (hormones)
Found in vertebrates and invertebrates
Function in development
What ligands are involved in the Hedgehog pathway?
: sonic, desert, Indian hedgehob
What receptors are involved in the hedgehob pathway?
What is the ultimate target of the Hedgehog pathway in the fruitfly?
cubitus interruptus (Ci), a transcription factor
What is the role in development of the Hedgehog pathway?
Cellular proliferation, growth, axon path finding, and somite development in vertebrates
Ptc is a membrane receptor that binds to Hh to activate Smo
Levels of membrane Ptc decrease after binding due to endocytosis
Smo is an intermembrane protein that, when activated, relays signals to HSC
Describe the Intracellular Hedgehog Signalling Complex (HSC)
Coastal 2 (Co2)
: kinesin-related protein
: Ser/Threo kinase
Supressor of fused (Su/Fu)
What happens if there is no Hh?
HSC is attached to microtubule (MT) complex which truncates Ci which becomes a repressor
What happens when Hh is present?
Differential binding of Hh to PTC leads to dissociation from MT complex and production of Ci trans-activators which activates target genes
It is not understood how ___ goes from being ___ to soluble when Hh binds.
Hh proteins are not released ___; they are released into ___.
freely; cytoneme (long and thin tubes connecting cells)
#3bNov to follow
Describe the notochord.
Most dorsal region of the mesoderm
Ancestral structure persisting in some chordates, but only found in embryos of verterbrates
Function is differentiation - sends signals to somites
Releases hormones to ectoderm cells to form neural plate
A division of the body of an animal.
Ventro-lateral mesoderm (paraxial mesoderm)
Gives rise to bone, cartilage, skin dermis (dorsal side of body)
In developing vertebrate embryo, somites are masses of ___ distributed along the two sides of the ___.
mesoderm, neural tube
Somites will eventually become ___ (___), ___ (___), and ___ (___).
dermis (dermatome), skeletal muscle (myotome), vertebrae (sclerotome)
The ___ differentiates before the ___ and ___, so the term ___ is sometimes used to describbe the combined ___ and ___.
sclerotome, dermatome, myotome, dermomyotome, dermatome, myotome
Neural tissue forms from ___ except for the ___ which develops from ___.
ectoderm, spinal cord, mesoderm
Somites bud off as cubes from ___ tissue (from ___ mesoderm).
What are the four compartments of somites?
: vertebrae and rib cartilage
: musculature of the back, ribs and limbs
: skin on the back
: tendons and some blood vessles
___ cells are transitional cells. They are ___-potent.
Somites undergo MET, ___.
Mesenchymal epithelial transitions
Ventral influences on somites include ___ and ___.
notochord, ventral portion of the neural tube
The dorsal portion of the somite becomes ___, which then becomes ___ and ___.
epithelial dermomyotome, dermatome, myotome
The ventral portion of the somite becomes ___, which then becomes ___.
the mesenchymal sclerotome, bone
The gradient from the notochord yields ___ for the nearest part of the somite, and ___ for the farthest part.
Wnt and dermomyotome yields ___.
Wnt + Shh and dermomyotome yields ___.
Describe the signals involved in early somite development.
: Wnts (canonical and non-canonical)
: (secreted by notochord) - Shh and Noggin
What determines which eventually fate of structures?
Location (e.g. dorsal, ventral, distance from notochord, etc.)
Shh is secreted by both the the ___ and the ___.
notochord, neural tube
Bone structure differentiation is driven by ___.
Shh and Noggin
Noggin binds and inactivates ___.
bone morphogenetic protein (BMP)
#End of 3bNov2011
#Beginning of 8Nov2011
Convergent extension, migration, and thickening of cells leads to __.
Describe the various models and the movements in each.
Look this up
Ventral cells are influenced by __.
Shh and noggin
Gli is activated by __ and activates what type of cell(s)?
Shh, myogenic and dermogenic
Dorsal cels are influenced by ___.
Gli is an ortholog of ___.
Noggin inhibits ___ which inhibit ___.
Wnts activate ___ which lead to ___.
Epithelialization, myogenic and dermogenic cells
The ___ half produces ___ from the dorsal part of the neural tube.
medial, Wnt1 and Wnt3a
The ___ half produces ___ from the ectoderm.
Wnt4, Wnt6, and Wnt7
The dorsal portion gives rise to the ___.
The midline gives rise to the ___.
Canonical wnts give rise to the ___ which, along with ___, give rise to ___.
epithelial cells, Gli 1 and 2 (from Shh), muscle
___ and ___ are muscle-specific transcription factors activated by ___.
In post-mitotic myoblasts, ___ and ___ act together (or ___) to form ___.
Dorsal Wnts, ventral Shh (along with Gli), synergize, muscle
Wnts promote a ___ fate. ___ promote a ___ fate. The ___ requires both signals.
dorsal epithelial dermomyotomal, mesenchymal sclerotomal, both
In vivo experiments show that the maturing somite contain ___ for both Wnt and ___.
antagonists, Shh and noggin
Explant experiments with just ___ showed that Shh antognizes ___ by ___. Similarly, Shh is antagonized by expression of ___ in the ___.
somites (no notochord, etc.), Wnt, upregulating Ptc1. frizzled-related protein (sfrp2), scleratome
Describe the Growth-arrest specific gene 1(Gas1).
Its protein products work together with p53 (stops growth)
Prevents cells from entering S phase which stops cell division which stops Shh pathway
BMP4 is expressed ___, ___ MyoD expression, and induces ___ which is required for ___.
in the doral neural tube, represses, Wnt11 expression in the dermamyotome, dermis differentiation
After the "normal" dermis is formed, ___ induces the formation of ___ dermis in ___ resulting in ___.
BMP2, dense, the chick, feathers
N-cadherin is expressed in ___. But as it differentiates, the ___ loses expression. The ___ is responsible for this downregulation which was demonstrated by a ___ experiment.
the entire early somite. scleromyotome. notochord, implantation
The dermomyotome has a ___ rate of cell division, and is not ___. It is composed of a ___ pool of ___ with different ___.
high, uniform. heterogeneous, progenitor cells, cell division patterns
Some cells in the dermomyotome ___ and give rise to ___ and ___. Others undergo ___ and contribute to the ___.
delaminate (move away from cell line), limb muscles, blood vessels.
EMT (epithelial-mesenchymal transition), dermis.
In the dermomyotome, cells close to the ectoderm give rise to ___.
dermis of the back, back muscles, limbs, endothelia
What are the two types of cleavage planes (or cell divisions) in the dermomyotome?
Describe planar cell divisions.
Result in daughter cells adjacent to each other; both differentiate.
Describe apico-dorsal cell divisions.
One daugther cell lies ventrally into the myotome and retains multipotency. The other lies dorsally and will form the dermis.
Describe myogenic precursors.
Once they being differentiation, they express MyoD and Myf5
Once a cell expresses ___, it has ___ to a muscle cell.
The ___ is competent to give rise to the dermis. There is no exclusive marker for the ___ in the dermamyotome.
entire somite. dermal progenitors
It is not known what ___ regulate dermis differentiation, but they appear to be released by ___.
factors, ectodermal cells
Wnt regulates ___ in ___.
Epithelial cells, dermamyotome
Myogenic cells need ___.
Shh, Pax-3, MyoD, Myf5
Describe what is required for differentiation for different cell types.
Need to prepare this.
Osciallatory gene expression patterns occur during ___.
Neural progenitor maintenance
Cells migrate and "clump" every __ hours.
What ___ and __ these oscillations, the "___", is unknown.
turns on, regulates, core oscillator
The ___ pathway is involved in the oscillations and its expression also ___.
What three pathways are hypothesized to control the timing of somite formation?
Notch, Wnt, Fibroblast growth factor (FGF)
What evidence is there for the three pathways to control somite formation?
Period of osciallation expressions matches period of somite formation.
50 genes in these pathways have oscillatory patterns of expression.
What two questions remain unanswered w.r.t. somite oscillations?
How are these oscillations generated?
What protein is the "master oscillator"?
How do we know that the three pathways are not the master oscillator?
Knockout in zebrafish for these three does not prevent somite formation
What is one implication of these oscillations?
Cell division for each "clump" is on a different schedule (every 2 hours)
___ is important in somitogenesis because if its knocked out, ___.
somites are not fully differentiated
The initial gene targes for Notch/NICD are ___.
Hairy/E (spl) family including -
Hes/Her genes are regulated by ___.
negative feedback loops
Notch is bound and activated by ___, and after 2 ___, ___ is expressed ___ the pathway.
delta/jagged, cleavages, Hes/Her, inactivating/repressing
What are two outcomes of the Notch pathway?
Differentiation and inhibition of differentiation
Describe the differentiation outcome of the Notch pathway.
Via lateral inhibition, Notch activation leads to a downregulation of Notch signaling which results in differentiation
In lateral inhibition, the cell with ___ Notch signalling activity ___ has ___ expressed and ___.
high, Hes/her, remains undifferentiated
Describe the inhibiting differentiation outcome of the Notch pathway.
Notch activation leads to ligand expression, and contiguous cells remain similar.
Different outcomes of the Notch pathway are important because ___.
they are a way of keeping stem cells undifferentiated
Somite periodicity varies by species including ___ for the chick, ___ for the zebrafish, and ___ for the mouse.
1 hour, 30 min, 2 hours
Somite periodicity is hypothesized to be regulated by a ___.
Each oscillation cycle corresponds oto the production of ___.
an additional somite
Regulators of the oscillation cycle include ___, but are ___.
: Hes1 & Hes7
: Her1 & Her7
: Hairy1 & Hairy7
NOT the clock
Notch's defined role is ___, but is not involved in actual ___ since disruption of ___ does not prevent ___.
keeping cell clocks synchronized, somite formation, notch signalling, somite formation
Cell clocks in a clump are ___ and lead to ___.
the same, somite
Experiments in ___ embryos at different points of somite formation where treated with ___.
Zebrafish were used because ___.
They are transparent
DAPT does the following: ___.
Directly inhibits gamma-secretase
Prevents Notch signalling
Gamma-secretase does what?
cuts the intracellular portion of Notch
What were the results of the zebrafish experiment?
Gradual disordering of oscillatory gene expression.
Propose a cellular experiment similar to the zebrafish experiment.
What are two proposed Notch functions w.r.t. somite development.
Establishment of somite boundaries
Establishment of anterior/posterior somite functional distinction
Zebrafish DAPT experiments on somite boundaries must be done ___ because these boundaires are ___.
early, lost after the 13th formed somite
Hox genes were first identified in the ___ and was called ___.
fruit fly, the antennopedia complex
The Hox genes are involved in ___.
body plan segmentation
In the fruit fly, there are ___ hox genes in ___ cluster(s).
In mammalian species, there are ___ genes in ___ cluster(s) possibly for ___.
39, 4, redundancy
In mammalian species, there are ___ members in ___ groups based on ___ and due to ___.
2-4, 13 paralogous, sequence similarity and position, gene duplication events
The order of genes in the fruit fly is ___.
the same as the order of features in the body plan
There are ___ regions of expression for hox genes, but they are activated ___.
Expression and establishment of anterior initiated during ___.
Early expression of hox genes include ___.
3' of cluster
Hoxa1, Hoxb1, Hoxa2, Hoxb2
After gastrulation, expression of hox genes include ___ and in .
5' of cluster, in the tailbud after formation of anterior somites
After the notochord activates ___ and ___ activating ___, hox genes activate depending on the ___ of the somite.
noggin, Shh, sclerotome
Hox genes have ___ with position of tissue, i.e. expression correlates to ___.
spatial colinearity, anterior/posterior axis formation
AP changes of Hox expression appear ___.
before physical boundaries are established
Hox expression in somites are not due to ___, but ___ due to ___.
cell migration, turning on/off expression, cell-cell interactions
In the chick, hoxb9 expression regulates ___.
the timing of cells ingressing thru the primitive streak
Hox__ is normally expressed in ___ region. If ectopically expressed, vertebrae are ___.
A10, lumbar. converted to lumbar
If Hox__ is knocked out, ___ become ___.
A10, lumbar, thoracic (ribs)
The occiptal skull bone is derived from ___.
the sclerotome of the first 4 somites
The thoracic skeleton is ___. The ___ is derived from two bands in ___.
not completely dervied from somitic mesoderm. sternum, lateral plate mesoderm
Axial skeleton fate occurs ___.
early in development
___ experiments in the ___ show that the skeletal axial pattern of ___.
Transplantation, chick, transplanted donor cells is maintained in the recipient
Axial fate of skeleltal somites appears to be set as ___ and ___ form from the ___ to the ___.
Neural tube, notochord, anterior, posterior
Study slide from 10Nov2011 on knockout experiments of hox genes on skeletal structure.
Hox genes are organized from __ to __.
The ___ gives rise to the vertebrate nervous system.
The notochord induces the ___ to become the ___.
The neuroepithelium folds and becomes the ___.
neural tube (future brain and spinal cord)
The cells above the notochord comprise the ___.
___ cells migrate laterall to the neural tube and become ___.
Sensory neurons of the PNS
Autonomic nervous system
The notochord's induction of the ectoderm leads to formation of ___ and ___.
the neural tube, neural crest
Neural tube development occurs in two ways:
Primary neurulation - invagination
Secondary neurulation - cavitation
Describe primary neurulation.
Proliferation of the neural plate cells
Pinching off the surface to form the tube
Describe secondary neurulation.
A cell layer sinks into the embryo.
Cavitation - forming of a hollow tube.
___ and ___ have a mix of primary and secondary neurulation while ___ only have secondary.
birds, frogs. mammals
Name the steps of primary neurulation in chicks.
1a. Shaping (of neural plate)
1b. Folding (by notochord)
2. Elevation (by neural crest)
3. Convergence (by neural crest)
___ is expressed in the neural plate while ___ is expressed in the presumptive epidermis.
___ is sufficient for neural tube formation. This was determined by an experiment using ___ in ___.
N-cadherin, ectopic expression, an explant
In a chick embryo at 24 hours, the anterior portion beings ___, while the posterior portion begins ___.
___ is critical in NT formation.
___ cells arise from interactions and ___ from the neural tube and the ___.
neural crest, induction, epidermis
Research has show that ___ cells generte the neural plate.
The medial ectoderm ___ and is induced by the ___ to ___.
migrates, notochord, thicken and invaginate into the NT
Surface ectoderm ___ and gives rise to ___ and ___.
does not migrate, skin epidermis, cranial placodes
Cranial placodes give rise to ___ which have special ___.
cranial sensory ganglia, senses: auditory, vision, taste, smell
Neural crest cells ___ and give rise to both ___ and ___.
migrate, neuronal, non-neuronal
___ cells do not give rise to brain structures, but instead to ___.
sensory neurons, melanocytes, neuroendocrine, Schwann cells
___ cells give rise to brain structures (___) as well as ___.
cranial sensory ganglia, melanocytes, skull and facial cartilage
Do neural crest cells originate from a discrete pool of cells?
No. Lineage tracing after NT closure showed that some cells can give rise to CNS and neural crest cells.
Differentiation of neural crest cells occur ___.
after they migrate out of the influence of the neuroepithelium
Before NT closure, cells in the ___ can give rise to ___.
neural plate, neural crests, CNS, and epidermis
If a cell is placed within the fold of the neural plate before closure, ___, but not after.
it can give rise to all three fates
There is evidence implicating ___ in inducing ___ NT cells to give rise to ___.
shh, ventral, motor neurons
The notochord is ___ to induce the entire NT, i.e. it ___ the ___ side of the NT.
not sufficient, does not induce differentiation, dorsal
Neural crest cells are induced by interactions with ___ cells; i.e. a ___ must be present for these cells to be formed.
epidermal, physical interaction
It has been shown that ___ prospective neural crest cells in a different location ___.
transplanted, still gave rise to neural crest cells
A neural crest inducer must be a ___ molecule. Candidates include ___.
BMP-4/7 are ___ to induce neural crest phenotype from ___.
What genes/proteins are expressed only in the dorsal NT?
Neither ___ nor ___ are required for formation of all neural crest cells.
___ are expressed as a result of ___ interactions with the dorsal NT. They are ___ by the ___, so are only expressed on the dorsal side.
Slug, Pax3, Msx-1/2, dorsalin-1; epidermal
How do you show what genes/proteins are required for the formation of neural crest cells?
- Show by knockout w/ genetic organism
There are ___ sub-families of cadherins.
All cadherins bind to ___.
Cadherins type ___ bind to intracellular proteins alpha and beta ___ (i.e. interact with ___).
1 and 2, catenin, cytoskeleton
Some cadherins bind to ___ involved in ___ pathways.
enzymes, signal transduction
Cadherins ___ are expressed during NT development and ___.
E, N, 6-B, 7
neural crest cells formation
During the formation of the NT, there are many different ___ for different ___.
The Xena protein is expressed in the ___ and is involved in ___.
cellular adhesion and cytoskeleton dynamics
Knockdown of Xena results in ___ and ___ cells instead of ___ ones. Earlier injections result in ___.
failure to close the NT, round, elongated
absence of the neural plate.
Xena is required for ___.
the changes in cell shape during neurulation and cell-cell adhesion.
Knockdown of Xena results in more cells expressing ___.
Xena knockdown prevents NT cells from ___.
Neural tube related birth defects include ___ and ___, a failure to ___.
Anencephaly, spina bifida, close
Anencephaly is the ___.
lack of closure of the NT
Spina bifida is the ___.
failure of closing the posterior neurospore
Cells in the limbs originate from ___.
___ are responsible for vertebrate limb development.
Morphogen hormonal gradients
What is the proximal signal for a new limb?
Retinoic acid (RA)
What centers coordinate PD and AP limb axis development?
Apical ectodermal ridge (AER)
Zone of polarizing activity (ZPA)
What hormone(s) is(are) associated with the AER?
Fibroblast growth factors (FGF)
What hormone(s) is(are) associated with the ZPA?
What are the three compartments of the PD axis?
The anterior portion of the AP axis corresponds to ___.
skeletal morphology of the zeugopod, e.g. radius/ulna or tibia/fibula
The posterior portion of the AP axis corresponds to ___.
autopod, e.g. digits
What are the models of limb formation?
Wolpert's French flag model
Progress zone model
Early specification/expansion model
Differentiation Front model
Two signal gradient
Describe Wolpert's French flag model.
Single gradient from proximal to distal determines limb development
The AER controls ___ and ___ of the PD limb-bud axis.
Describe the formation of the AER?
Initial limb bud composed of ectodermal pocket filled with mesenchymal cells
Outgrowth results in ectodermal thickening/elongation of epithelium at the tip
If the chick AER is removed early in limb formation, ___.
the limb will not form
The PD identities of the mesenchymal cells is influenced by ___.
the time of interaction with the ectodermal cells
The most distal cells depend on the AER the ___.
The limb bud is not ___.
If the tip on the bud is removed, ___.
the limb does not form
Grafted AER tissue or ___ induces ___.
ectopically expressing FGFs, ectopic PD outgrowth.
AER removal induces ___ which can be rescued by ___.
cell death on the adjacent cells, FGFs
Describe the progress zone model.
The AER determines the PROGRESS ZONE, i.e. distal mesenchyme, to acquire a PD fate
Determination is a result of TIME SPENT by proliferating undetermined cells in the progress zone
This implies cell-cell interactions as opposed to hormone interaction
Transplantation of cells at tip expressing FGF shows that cells were ___ because they form ___.
Already differentiated, extra digits
What is the role of ZPA?
It acts as an organizer of AP limb bud axis
Ectopic expression of ___ OR transplantation of the posterior limb bud mesenchyme to the anterior margin recipient wing buds resulst in ___.
Shh, mirror image duplication of digits
Transplantation experiments limb bud mesenchyme cells shows that ___ depends on the ___ of cells transplanted.
number of duplicated digits, number
What two hormones are in the two-gradient model?
Retinoic acid(RA) and FGFs
RA signaling turns on ___ which are expressed in ___.
Meis1/2, Hox a11, Hox a13
the proximal portion of the limb bud
RA is involved in inducing ___ and inhibiting ___.
a proximalizing fate of the limb bud, distal fate
What enzyme would you knock out to knock out RA synthesis?
What would you expect with the knockout of RALDH?
No RA -> short limb w/digits
What happens if RA is injected into the distal region of a limb?
No digits (but I'm not sure of this answer)
What FGFs are used in limb development?
FGF-4, 9, 17
Required for AER-FGF signaling
Expressed in limb bud mesenchyme
Required for limb development
Describe FGF-4, 9, 17
Expressed in AER
FGF-4 can rescue FGF-8
Not required for limb development
Expressed thruout AER
Required for formation of stylopod (e.g. humerous)
FGF-4 can rescue FGF-8
What is the stylopod?
most proximal skeletal element
Not involved in differentiation, just cell division
Required for most distal skeleton structures
Required for proliferative (cell division) expansion of early specified PD axis
List the problems with the Progress Zone Model.
FGF-8 deficient mice have no effect on distal elements, but have no proximal elements
PD progenitor cells in BUD are specified early
Late-stage AER removal eliminates distal mesenchyme, but some stem cells remain to compensate
According to the Progress Zone model, proximal structures are formed ___ than distal structures.
Good web info.
Describe the Differentiation Front Model.
AER/FGF signaling controls survival/proliferation in dose-dependent manner
After proliferation, proximal exposed to RA, distal exposed to AER-FGFs
Shh specifies the ___ and ___ identities.
AP limb, digit
Shh is expressed in the ___.
Hox d is involved in activation of ___.
Shh gene expression
Shh expression regulates the formation of ___.
digits 2-5 in mouse and humans (but not thumb)
Digits ___ and ___ require long-range interactions of ___.
2, part of 3, Shh
Most of digit ___ requires short term expression of ___.
Digits ___ and ___ require long-term expression of ___.
4, 5, Shh
In the chick, determination of progenitor cells to give rise to ___ is regulated by ___, which targets ___.
specific digits, a BMP4 gradient, mesenchymal cells
Urodele ___ (___) and ___ are capable of limb regeneration.
amphibians (salamanders), fish
Salamanders can regenerate:
limbs, tails, eye parts, spinal cord, portions of intestines and jaw
Salamander regeneration requires which to germ layers to regrow?
mesoderm (muscles, skeletal, blood vessels)
ectoderm (epidermis, nerves)
What is the blastema?
A mass of rapidly-dividing mesenchymal cells that migrate to the site of the stump and replace the amputated structure
What types of experiments were used to identify signal pathways of regeneration?
transplantation, amputations, dissections, irradiations
What proteins/signals were found to be involved in the regeneration pathways?
Wnts, FGFs, BMPs, Notch, and RA
Adult frogs and toads have ___ ability to regenerate lost limbs.
What are three basic steps in limb regeneration?
1. epidermis layer covers stump
2. Mesenchymal cells interact and bind
3. These cells become disorganized (less diff) and begin dividing rapidly forming the blastema
Why do the cells in the blastema become disorganized?
Mesenchymal cells are derived from the mesoderm and thus need to "go back" to be able to form neurons.
Nerve enervation is required for ___.
rapid cell division and structure formation
If the nerve is amputated at the ___ of the limb, it ___.
base, will not be regenerated
Neurotrophins are a family of ___ that ___.
proteins, induce survival/development of neurons
Neurotrophic factors are required for ___.
blastemal formation and differentiation
Transplantation of nerve tissue ___.
allows regeneration if nerve tissue is missing
What are three requirements for the "inducer" of limb regeneration?
1. Present in the limb nervous system tissue
2. Induces blastemal formation and differentiation
3. Can rescue amputated limb without nerve tissue
___ has been proposed as the inducer for limb regeneration.
Anterior gradient (nAG)
___ is expressed by ___ of amputated limbs at day __ until day __.
nAG, Schwann cells, 5, 12
What are three steps of fin regeneration?
1. Wound healing - epidermal covering
2. Blastema formation - rapid cell division and mesenchymal disorganization
3. Regenerative outgrowth - cell division, patterning, differentiation
___ cells don't normally divide.
During limb regeneration, differentiated adult tissue rapidly ___.
changes to a proliferative and patterning state
Proteins released due to amputation include:
FGFs, Wnts, and Activin
After amputation, FGFs trigger ___.
the expression of microRNAs
A microRNA which regulates skeletal and cardiac muscle cell differentiation
What are three approaches used in regenerative medicine?
1. Implantation of stem cells for structure regeneration
2. Stem cells are provided with a scaffold to induce regeneration
3. Remaining cells of affected structure are induced to regenerate
Shh is ___ for digit regeneration.
The plasticity of differentiated cells refers to how some differentiated mammalian cells have ___, including ___.
some regeneration ability
Peripheral Schwann cells
Pancreatic beta cells
It is ___ to alter mammalian gene expression patterns to induce limb regeneration.
Hox __ is expressed at high levels in the ___, but it is ___ after limb development in the mouse.
c6, blastema, turned off