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what are the morphologies of bacterial cells
- coccus (cocci)
- bacillus (bacilli)
- coccobacillus
- vibrio
- spirillium
- pleomorphic
-
what is the morphology of coccus
sperical. perfect spheres
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what is the morphology of bacillus
rod. perfect rods
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what is the morphology of coccobacillus
short rods
-
vibrio look like?
short curved rods
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spirillium look like
spiral rods
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pleomorphic shapes are
variable. each cell looks different
-
extracellular layer that holds bacterial cells together after cell division
sheath
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what is the good news of an organism that forms groups?
it spreads more slowly
-
what is the bad news of an organism that forms groups?
it can hide from the Immune system longer
-
allows bacteria to move from on place to another.
alls cells to swim freely through an aquesous habitat.
flagella
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what are the three subtypes of flagella ?
- - monotrichous
- - lophotricphous
- - amphitrichous
-
what is monotrichous
flagella with a single flagellum
-
what is lophotricphous
flagella with small bunches/tufts/groups of flagella emerging from the same site
-
what is amphitrichous
with flagella at both poles of the cell
-
what is peritrchious flagella?
arrangement of flagella are dispersed randomly over the surface of the cell
-
flagella can detect and move to chemical signals this type of behavior is called
ex: toward food and away from stimulus such as chemical toxins
chemotaxis
-
movement of a cell in the direction of a favorable chemicial stimuulus/ attractant (usually a nutrient)
positive chemotaxis
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movement away from a repellent (potientially harmful) compound.
negative chemotaxis
-
in chemotaxis for flagella when it is swimming toward attractant the flagella will
swim/run more and tumble less
-
with flagella, if the bacteria is moving toward a repellent the flagella will
tumble more and swim for shorter periods.
-
swim toward/away from light
phototaxis
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swim toward/away from oxygen supply
aerotaxis
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moving toward/away from magnetic field. coordinates movement in response to magnetic fields. ex: orient to earth's magnetic field
magnetotaxis
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small, bristlelike fibers emerging from the surface of many bacterial cells.
- most contain protein.
- tendency to stick to each other/ and surfaces.
fimbrae
-
elongated, rigid tubular structure made of special protein.
-only in gram-negative where they are utilized in "mating"
pilus
-
mating process between cells.
involves partial transfer of DNA of one cell to another.
conjugation
-
they may be responsible for the mutual clinging of cells that leads to biofilsm and other thick aggregates of cells on the surface of liquids and for the microbial colonization of inanimate solids such as rock and glass
fimbrae
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some pathogens can colonize and infect host tissues b/c of tight adhesion between their what?
- fimbrae and epithelial cells
- ex: gonoccus-agent of gonorrhea colonizes the genitourinary tract E. Coli colonizes the intestine by this means
-
in the conjugation of pilus. a pilus from a donor cell unites with a recipent cell thereby providing...
cytoplasmic connection for making the transfer
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inner most part of a bacterial cell
cell wall
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forms thick layer over inner cell membrane. where cell walls gain their stability and strength from
petidoglycan
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protects the cell from osmotic shock
cell wall
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definition: a network of polysaccharide chains cross-linked by short peptides hat from the rigid part of bacterial cell walls
petidoglycan
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a peptide inter-bridge between the Diaminopimelic Acid of one glycana chain and the D-Alanine of another. the composition of this inter-bridge varies between species
Gram positive
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the tetrapeptides are joined directly
gram-negative
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examples: rubber cement, weak, soluble
gram-negative
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ex: rubber car tire, strong, tough, insoluble, lasts longer
gram-positive
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definition: think homogeneous sheath of peptidoglycan ranging from 20 to 80nm in thickness. also contains tightly bound acidic polysaccharides including: teichoic acid directly attached to peptidoglycan and lipoteichoic acid
gram positive
-
a polymer of ribitol or glycerol and phosphate embedded in peptidoglycan sheath. project outward from peptidoglycan layer. immunogenic
Teichoic Acid
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attached to the lipids in the plasma membrane.
project inward from peptidoglycan layer to cytoplasmic membrane- anchor.
liboteichoic acid
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composed of an outer membrane and thinner shell of peptidoglycan. contains specialized types of LPS and lipoproteins.
no peptide inter-bridge
gram-negative
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composed of lipid molecules bound to polysaccharides. the lipids form the matrix of the top laye of the OM and the polysaccharides strand project from the lipid surface.
lipopolysaccharides LPS
-
resistant to certain antibiotics
gram-negative
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inserted in the upper layer of the outer membrane. they have some regulatory control over molecules entering and leaving the cell.
prions
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many qualities of the selective permeability of gram-negative bacteria to bile, disinfectants, and drugs are due to the
prions
-
just underneath the outer membrane.
above and below peptidoglycan
important reaction site for a large and varied pool of substances that enter and leave the cell.
houses secreted degradative enzymes (pathology)
periplasm
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disrupts cross-linking between glycan molecules (makes the pepto layer weak)
more effective against gram+ b/c its excluded by prions in gram-
penicillin
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largerly composed of mycolic acid making them appear waxy and more resistant to chemicas, dehydration, antibiotics (pathology)
Mycobacterium
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bacteria without a cell wall
containssterols that make it resistant to lysis
found in may habitats such as plants, soils and animals
mycoplasmas
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form or shape. tendency for cells of same species to vary in some extent in shape in size.
mycoplasmas are this
pleomorphism
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contain peptidoglycan and stain gram-positive, but the bulk of their cell wall is composed of unique types of lipids.
ex: TB
mycobacterium
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underneath the cell wall
regulates transport into/out of the cell
flexible sheet molded completely around the cytoplasm
lipid bilayer with proteins emedded to varying degrees
- cell membrane
- 50% phospholipid
- 50% integral membrane proteis
-
polar head oriented toward the outside
nonpolar head towad the center of the membrane
embedded at numerous sites in this bilayer of various-size globular proteins
phospholipid
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freely permeable to water, dissolves gases, and small hydrophobic molecules by simple diffusion
phospolipid bilayer
-
too big to go through cells
ex: glucose and amino acids
hydophlic molecules
-
how do bacteria acquire most of their raw materials?
transport proteins
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what are the types of transport proteins?
- symporters
- antiporters
- uniporters
-
transport of two substances in the same direction
ex: sugars
symporters
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transport of 2 substances in opposite directions
ex: anitbiotics
antiporters
-
transports one substance in one direction (either in or out)
ex: cations, potassium, calcium
uniporters
-
clever (esp. for bacteria)
the substance is chemically altered during transport (phosphotranserase system)
ex: glucose and other sugars
the cell can soak up all the glucose by converting into glucose-phosphate
group translocation
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how do bacteria sense and respond to their environment?
receptors
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transduce chemical signals from outside the cell to inside the cell
receptors
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a single, circular, supercoiled, double stranded DNA molecule.
replicates only when the cell divides
bacterial chromosome
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what are the types of bacterial chromosome
-
where one gene goes so do all the other (little variation)
single bacterial chromosome
-
easier to replicate than linear (humans have linear)
circular bacterial chromosome
-
like, ours and replicates like ours
dsDNA bacterial chromosomes
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inside the bacterial cell
the molecular machine that assembles amino acids into proteins
comprised of 54 proteins and 3 RNAs
target of many antibiotics
ribosomes
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withstands hostile conditions and faciliate survival.
dormant bodies produced by bacteria Bacillus, and Clostridium.
two-phase life cycle taht shifts between a vegative cell and an endospore
exists in an inert, resting condition that is capable of high resistance and very long-term survival.
endospores
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the time required for a complete fission of cycle. from parent cell to 2 new cells is called
generation or doubling time
-
the period between an individuals's birth and the time of producing offspring. in bacteria each new fission cycle increases the population by a factor of 2, or doubles it
gneration
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a measure of the growth rate of an organism
compared with the growth rates of most other living things, bacteria are notoriously rapid.
average for bacteria is 30-60
generation time
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Nt
- the number of bacteria at a certain time
- (what you have to try and calculate)
-
N0
the number of bacteria at the beginning
-
n
the number of times the bacteria divide
-
how do you get n?
- 1st in the generation time divide 60 min by those mins. for ex: if generation time was 20. divide 60 by 20 = 3
- 2nd: times the answer for generation time by the elasped time to get n.
- to solve for nt:
- replace the value for n into the equation :)
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what do you get when nutrients are limited?
- growth curve
- it takes a little while for them to get inot your blood stream.
-
what are the stages of growth curve?
- lap phase
- log phase
- stationary phase
- death phase
-
period of adjustment
no increase in cell number
cells dont divide
flat period on the graph when the population appears not to be growing or is growing at less than the exponential rate
lag phase
-
cell number doubles every generation
(caused by unlimited nutrients)
log phase
-
no net incrase/decrease in cell number
(cell division = cell dealths)
(caused by depleted nutrients/build-up of toxic by products)
stationary phase
-
net decreased in cell number
caused by prolonged stationary phase
death phase
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what are major factors that control bacterial cell growth?
- temperature
- oxygen availability
- energy/carbon source
- ph
- what avialability/concentration of water
-
what is the temperatuure requirement for psychrophiles (many pseudomonas) ?
below room temperature
-
what are the temperature requirements for mesophiles (e. coli and all human pathogens) ?
about room temperature
-
what are the temperature requirements for thermophiles ( lactobacillus delbruekii- yogurt)?
above room temperature
-
what are the temperature requirements for hyperthermophiles (pyrolobus fumarimii -ocean vents)?
extreme heats
-
require the level of oxygen normally present in air
obligate aerobes
-
require the absence of oxygen
obligate anaerobes
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can grow in the presence OR absence of oxygen but grow faster with oxygen
facultative anaerobes
-
require reduced levels of oxygen
microaerophiles
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grow equally well in the presence as in the absence of oxygen.
(they dont use oxygen at all so doesnt matter)
aerotolerant
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types of energy sources
- phototroph
- chemotroph
- lithotrophs
-
derives its energy from the sun (plants)
photoroph
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derives its energy from organic compounds (us, glucose, fatty acids)
chemotroph
-
derives its energy from inorganic sources (rocks)
lithotrophys
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what are the carbon sources
-
derives carbon from CO2
autrotrophs
-
derives carbon from organic compounds (sugars/amino acids/fatty acids)
heterotrophs
-
what are the combinations of carbon sources
- photoautotrophs
- chemoheterotrophs
- photoheterotrophs
-
derives energy from the sun AND carbon from CO2
photoautotrophs
-
derives its eergy from organic compounds AND its carbon from organic compounds
chemoheterotrophs
-
derives its energy from the sun AND its carbon from organic compounds
photoheterotrophs
-
ph sources are
- neutrophile
- acidophiles
- basophiles
-
grow best from pH 5 to pH 8 (most bacteria)
neutrophiles
-
grow best pH 5 (heliobacter pylori)
acidophiles
-
grow best above pH 8 (Bacillius alcalophiles) few but not many
basophiles
-
what is a water availability source?
osmotolerant
-
tolerant to relatively high (10%) salt concentrations (staphylococcus some Archae)
osmotolerant
-
what are factors to consider in control?
- 1. type of organism
- 2. number of organisms present
- 3. environmental conditions
-
list the types of organisms we learned, from hardest to control to easiest.
- Hardest
- 1. prions
- 2. endospores
- 3. mycobacteria
- 4. pseudomonas
- 5. non-enveloped viruses
- 6. vegetative bacterial cells/ enveloped viruses
-
explain the number or organisms present as a factor to consider in control
- decimal reduction time Dvalue
- D value = time nessary to kill 90%
-
explain the environmental conditions to consider in control?
pH, temp, salt, (smoke) water
-
what is the D value graph
- REMEMBER START AT 0 and the given amount of bacteria to start with , then go each interval that is given ex: if D =30 go every 30 minutes 1000 bacteria to start w/
- 0 --1000
- 30 min--- 100
- 1hr---10
- 1hr 30min---1
- 2 hrs--- less than 1
- DONT FORGET to go until you have less than 1!!!
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what are physical methods for reducing bacterial populations?
-
200 degrees C for 1.5 hours to for sterile (wire loop)
dry heat
-
121 degrees C for 15 mins for sterile
moist heat
-
dehydrate vegetative cells
- alcohols
- (chemical control of bacterial populations)
-
denature proteins disrupt the 3 d structure
- aldehydes
- (chemical control of bacterial populations)
-
mutagenic
ehtylene oxide (chemical control of bacterial populations)
-
oxidizing agents (chemically alter proteins)
- halogens
- (chemical control of bacterial populations)
-
react with sulfhydral groups (Hg)
- Metals
- (chemical control of bacterial populations)
-
ozone (chemical control of bacterial populations)
oxidizing agent
-
peroxides (chemical control of bacterial populations)
oxidizing agent
-
destroy cell membrane/proteins (chloraspetic)
phenolics(chemical control of bacterial populations)
-
quatemary ammonium compounds (quats)
(chemical control of bacterial populations)
dirupt membranes
-
types of radiation and bacterial populations
-
what do gamma rays do
penetrating, ionizing radiation to free radicals (very reactive)
-
what are ultraviolet rays
non penetrating to thymine dimers (TT) mutagenic
-
what do x-rays do
penetrating, ionizing radiation to double strand breaks in DNA (mutagenic)
-
prevent population from getting bigger
bacteriastatic
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kill bacteria and decrase the size of the population
bacteriacidal
-
classified based on their chemical structure, mechanism of action, and biological source
- antibiotics
- why is this important? if one type of antibiotic is ineffective a mechanistically different antibiotic should be used
-
Beta-lactams
effective against?
mechanism?
examples?
- effective against: gram-positive bacteria
- mechanism: inhibtis cross linking of cell way peptidolycan
- examples: penicillins and cephalosporins
-
Semi-synthetic penicillin
examples
effective against
mechanism
- examples:ampicillin and amoxycillin
- effective against: gram-positive and gram-neg
- mechanism: inhibits cross linking of cell wall ( peptidoglycan)
-
Clavulanic Acid
examples
effective against
mechanism
- examples:clavamox (is clavulanic acid plus amoxycillin)
- effective against:beta lactam resistant gram-positive and gram-neg bacteria
- mechanism:suicide inhibitor of beta-lactamases (clavulanic acid)
-
Aminoglycosides
mech?
mechaism: inhibits translation (ribosomes) rna and the protein. if it cant make protein then it dies.
-
glycopeptides
examples
effective against
mechanism?
- examples: Vancomycin
- effective against: gram-positive bacteria, esp. staphylococcus aureus mrsa
- mechanism: inhibits steps in murein (component of the cell wall) (peptidoglycan) biosysnthesis
-
polyeptides
example?
effective against/spectrum?
mechanism?
- example: polymyxin
- effective against/spectrum: gram-neg bacteria
- mechanism: damages cytoplasmic membranes
-
Rifamycins
example?
effective against/spectrum?
mechanism?
- example: rifampicin
- spectrum:gram-pos and gram-neg bacteria, esp. mycobacterium tuberculosis
- mechanism: inhibits transcription (RNA polymerase)
-
polyenes
example:
spectrum/effective against?
mechanism?
- example: amphotericin (strephtomyces nodosus), nystatin(strephomyces noursei)
- spectrum: fungi (candida)
- mechanism: inactivate membrances containing sterols
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