Bmsc 200 Hb Mb

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Scottygo
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178368
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Bmsc 200 Hb Mb
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2012-10-19 20:18:27
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Bmsc200 midterm1 Hb Mb
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Bmsc 200 Hb Mb
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  1. What is a ligand?
    any molecule which is reversibly bound by a protein
  2. What is induced fit?
    when the binding of a ligand causes a conformational change in a protein that alters its function.
  3. What is a binding site?
    a site on the protein which is complimentary in size, shape, charge, and/or hydrophobicity to a specific ligand where it binds
  4. What is the binding site of an enzyme called?
    an active site
  5. What is Myoglobin (Mb)
    a monomeric protein that facilitates oxygen transport in peripheral tissue
  6. What is Hemoglobin (Hb)?
    tetrameric protein found in erythrocytes (red blood cells) that transports oxygen from lungs to the periphery.
  7. What is the structure of Myoglobin?
    • Myoglobin is a small globular protein which consists of:    i) a single polypeptide chain of 153 residues arranged in eight α-helices.  
    • ii) heme (iron porphyrin) prosthetic group (covalently-bound, non-polypeptide component required for function)
  8. What is P50?
    the amount (partial pressure) of oxygen required to half-saturate myoglobin
  9. What is the formula for the affinity for oxygen?
  10. What are the 3 challenges of Oxygen transport?
    • -Solubility of oxygen in serum is too low for passive diffusion.  
    • -None of the amino acid side chains is suited for reversible oxygen binding. 
    • -Transition state metals have strong tendency to bind oxygen (but also a strong tendency to produce damaging free radicals).
  11. What is a Heme complex?
    A ring system that utilizes the oxygen binding properties of Fe while preventing free radical formation by filling its other bonds, to achieve oxygen storage and delivery
  12. What are Allosteric effectors (modulators)?
    molecules that regulate a proteins actions by binding to a protein at a site separate from the functional binding site (may be activators or inhibitors).
  13. What is a homotropic interaction?
    When the normal ligand and modulator are the same
  14. What is a heterotropic interaction?
    when the modulator is different from the normal ligand
  15. What are allosteric proteins?
    proteins regulated by allosteric effectors
  16. What do allosteric activators do?
    stabilize the R state (relaxed) of a protein
  17. What do allosteric inhibitors do?
    stabilize the T state (tense) of a protein
  18. What is the oxygen saturation of Myoglobin at 30tor(the start of pheripheral tissue)?
    94%
  19. What is the oxygen saturation of Myoglobin at 100tor(lungs)?
    98%
  20. The shape of the Hemoglobin binding curve shows positive cooperativity.  What does this mean?
    O2 affinity increases as O2 is bound
  21. in T state Where is iron wiht regards to the heme ring?
    iron is outsidethe heme ring
  22. What happens structurally as the iron of a sub unit binds to the first oxygen of a hemoglobin molecule? 
    • -binding O2 moves iron into plane of the ring (R state)
    • -this movement causes structural changes which are translated to other subunits putting them in R state
  23. what is 2,3 Biphospho-D-glycerate?
    • -2,3 BPG is an allosteric heterotropic modulator of hemoglobin.
    • -Lowers affinity for oxygen, stabilizes t-state
  24. How does 2,3 BPG bind to Hemoglobin?
    2,3 BPG carries five units of negative charge and binds to positively charged pocket of deoxyhemoglobin.
  25. How many residues bind 2,3,BPH in adults Hemoglobin vs fetus'?
    • -Adult Hb has six (+) residues for 2,3BPG binding,
    • -fetal Hb has only five.
  26. When does the body increase 2,3 BPG production?
    High altitudes where less oxygen is taken in by the lungs
  27. What are the two ways CO2 is remove from the body by red blood cells?
    • 1)2 is taken up into red blood cells and converted to bicarbonate and a proton by the enzyme carbonic anhydrase. 
    •  
    • 2) CO2 binds as a carbamate group to the N terminus of eachchain of hemoglobin to form a carbamino-terminal residue.
  28. What is the effect of CO2 uptake on red blood cells and hemoglobin?
    -Ph is lowered by release of protons which causes hemoglobins affinity for oxygen to decrease resulting in oxygen release
  29. What happens to Hemoglobins affinity for oxygen times in situations where pH drops (such as during physical exercise)?
    Affinity decreases and more oxygen is released
  30. What happens at the primary structure of hemoglobin in sickle cell anemia?
    a single aminoacid change (Glu6Val)
  31. In what state of Hemoglobin does sickle cell anemia reveal itself and How?
    in its De-oxygenated state the valine which is not hydrophilic is pulled in to the hydrophobic center of the molecule causeing a stiff sickle shape so these molecules fit together easily to form fibers
  32. How does sickle cell anemia help deter malaria?
    • -when the blood cell is attacked it lowers its pH
    • -This deoxygenates Hemoglobin putting it in its sickle shape
    • -these sickles are destroyed by the spleen

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