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How does the energy of the universe respond to an isolated reaction?
- The Energy of the Universe is constant. It comprises the the systemic change in energy and the surrounding change in energy.
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Describe the Entropy of the universe:
- The entropy (disorder) of the universe is increasing. This can also be said that:
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Describe the relation between The change in energy and the change in disorder:
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What can the ideal Gibbs free energy for a reaction be defined as?
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What are standard or ideal conditions to calculate the change in energy?
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How is the real change in energy calculated from the ideal change in energy?
- Where Q is the mass action ratio of [P][R]
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What is the mass action ratio?
It is equal to Q=[products]/[reactants]
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What is lnQ when P=R=1M?
What is the real change in energy at these conditions?
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What is the
- It is the phosphorylation Potential.
- Net Exergonic.
- Ideal is -30.5 kJ/mol
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Describe the change in energy when bonds break:
Bonds breaking always requires energy, thus it is endergonic.
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Describe the change in energy when bonds form:
When bonds are formed unstable participants enter into stable forms. Entering this more stable form allows them to have a lower energy state. This is always Exergonic.
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If:
What is:
?
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Which would be more exergonic, the hydrolysis of ATP into ADP and phosphate, or into AMP and pyrophosphate?
- ATP into AMP and Pyrophosphate.
- Comparing the ideal delta G:
- ADP+P:AMP+PP
- -30.5:-45.6
- 2:3
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Generally will have more or less resonance forms make a product more exergonic?
- More resonance=more stable.
- more stable=lower delta G.
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does sulfur make strong or weak pi Bonds?
weak pi bonds.
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What is the role and final change in energy for an adenylate kinase reaction?
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Would ATP into ADP+P or GTP into GDP+P be more exergonic?
They would be energetically identical because all NTP's are more or less energetically identical.
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What does phosphocreatine do?
- It allows ADP to be turned into ATP in muscles.
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What are 2 ways of determining the oxidation states?
- 1. Standard electron assigning (H+1, O-2)
- 2. Determining the electron position based on each bond:
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How would the electrons be assigned for ethanol?
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What are the oxidation numbers for the atoms in ethanol?
- O (6-8)=-2
- C1(4-5)=-1
- C2(4-7)=-3
- H1-6(1-0)*6=+6
- Net=0
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What does a concerted reaction mean?
That it happens all in 1 step
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What is Hydride?
Is it a strong or weak leaving group?
- H: Hydrogen with both electrons.
- H-
- Strong leaving group.
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What 4 things would indicate a REDOX reaction?
- 1. Direct transfer of electrons
- 2. Hydrogen atoms are transfered as H+ e- pairs.
- 3. Hydride ions are transfered (NADH NAD+)
- 4. Direct combination with O2
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What does NAD stand for?
Nicotinamide Adenine Dinucleotide.
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Is nicotinamide a purene or a pyrimadine.
- It is a special pyrimadine called a pyradine.
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What is the structural change between NAD+ and NADH?
- the pyradine is reduced by Hydride at the 4 position. resulting in NADH and H+
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What is the structural difference between NAD+ and NADP+?
- Hydroxyl is eserified with phosphate.
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What wavelength does Oxidized NAD+ absorb?
260nm.
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What wavelength does Reduced NADH absorb?
around 340 and also 260.
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What is E'o?
Standard reduction potential.
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What is E?
real reduction potential.
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What is the equation to give the real reduction potential?
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how does the change in reduction potential relate to reduced reduction potential and the oxidized reduction potential?
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How does the change in energy relate to the change in reduction potential?
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How do you convert from C to K?
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What is the numerical value of R
8.315
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What is the numerical value of F?
96500
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What are two ways to regulate a pathway?
- 1. Changing the number of the enzymes.
- 2. Changing Enzyme activity.
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What process produces NADPH?
The pentose phosphate pathway.
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What is the preparatory phase of glycolysis?
- This refers to the first 5 steps.
- 2 ATP are used.
- 2 glyceraldehyde-3-phosphates are produced.
- Has 2 "commitment steps"
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Describe the payoff phase of glycolysis:
- This refers to the last 5 steps.
- Everything happens x2.
- Total: 4 ATP produced, 2 NADH, 2 pyruvate.
- Involves only 1 irreversible step.
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What do the exact values of the delta G depend on?
They depend on specific conditions, like concentration or heat in the system.
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What steps of glycolysis Involve large changes in the change in energy?
- 1 Glucose+ATP->glucose-6-phophate+ADP
- 3 Fructose-6-phosphate+ATP->fructose 1,6-bisphosphate+ADP
- 10 Phosphophenolpyruvate+ADP->pyruvate+ATP
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What enzyme catalyses the first step in glycolysis?
Hexokinase
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What enzyme catalyses the 3rd step in glycolysis?
- Phosphofructokinase-1
- (PFK-1)
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What enzyme catalyzes the 10th step in glycolysis?
- Pyruvate Kinase.
- Named for reverse reaction.
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