TCB Chs 6 and 7.txt

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Author:
mmcmull1
ID:
71782
Filename:
TCB Chs 6 and 7.txt
Updated:
2011-03-09 04:43:19
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TCB Exam2
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TCB Chs 6 and 7
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  1. A signaling circuit must solve 2 problems:
    1. Specificity - how can a protein exchange signals with the small subset of intended signaling partners

    2. How can a protein acquire rapid access to their signaling pathways in the sea of thousands of proteins?
  2. Serum-starved experiment
    • Immediate early genes: no de novo protein synthesis, transcribed less than an hour after serum administered.
    • ex: transcription factors, secreted growth factors, cytoskeleton construction

    Indicated protein structure, configuration or localization important (not protein concentration)

    • Delayed early genes: require de novo protein synthesis (blocked by cyclohexamide), within an hour after expression of immediate early genes
    • ex: reoganization of actin fibers, enhanced migratory capacity, survival signals blocking apoptosis
  3. How does the level of Myc serve as an indicator of the amount of mitogens present?
    Both Myc mRNA and prtoein levels turn over rapidly when growth factors or other mitogens are removed.
  4. Sevenless experiment
    Sevenless = gene mutation resulting in lack of formation of the seventh ommatidium in the eye of Drosophilia

    Discovery of Sos, promote GTP binding to Ras.
  5. Ras signaling pathway
    EGFR -> Shc -> Grb2 -> Sos -> Ras
  6. What is the purpose of the tyrosine kinase activity in the cytoplasmic domain of the receptors?
    Receptor phosphorylationg alters the physical location of downstream signaling partners
  7. SH2 domain
    binds to phosphorylated tyrosines -> allows a protein to physially interact with another protein containig phosphotyrosine

    • [acts as an intracellular receptor
    • ligand = peptide sequence containing a phosphorylated tyrosine and a flanking 3-6 amino acid peptide sequence]
  8. Examples of SH2
    • phospholipase C
    • PI3K
    • phosphatases
  9. How do growth factors activate a variety of downstream signaling pathways?
    each phosphotyrosine on the cytoplasmic tails of RTK has unique specificity for particular SH2 containing proteins which is dictated by the aminio acids flanking the tyrosine

    ex: PDGF receptor attracts Src, PI3K, Ras-GAP, SHP2, phospholipase
  10. Examples of SH2 with pasma membrane associated proteins
    Ras-Gap -> Ras, GTP hydrolysis
  11. SH3 domain
    binds to proline rich amino acid sequences in partner protiens -> proteins become substrates for the Src kinase

    acts in a similar fashion to SH2 domain to bind intracellular ligands
  12. Adaptor proteins
    proteins like Grb2 and Shc that have no fncctional domains beyond SH2 and SH3 domains
  13. How does Ras signaling ultimately lead to cell transformation?
    When Ras binds to GTP, its effector loop domain will physcially interact with several alternate downstream effector proteins (very poor affinity when Ras bound to GDP)

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